Chapter 9 Session information

The following packages have been used to generate this document.

sessionInfo()

## R version 4.5.0 (2025-04-11)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.3 LTS
## 
## Matrix products: default
## BLAS:   /opt/R-4.5/lib/R/lib/libRblas.so 
## LAPACK: /opt/R-4.5/lib/R/lib/libRlapack.so;  LAPACK version 3.12.1
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## time zone: Europe/Brussels
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats4    stats     graphics  grDevices utils     datasets  methods  
## [8] base     
## 
## other attached packages:
##  [1] SummarizedExperiment_1.38.1 Biobase_2.68.0             
##  [3] GenomicRanges_1.60.0        GenomeInfoDb_1.44.3        
##  [5] IRanges_2.42.0              S4Vectors_0.46.0           
##  [7] BiocGenerics_0.54.1         generics_0.1.4             
##  [9] MatrixGenerics_1.20.0       matrixStats_1.5.0          
## [11] gridExtra_2.3               patchwork_1.3.2            
## [13] hexbin_1.28.5               rWSBIM1207_0.1.19          
## [15] lubridate_1.9.4             forcats_1.0.1              
## [17] stringr_1.5.2               dplyr_1.1.4                
## [19] purrr_1.1.0                 readr_2.1.5                
## [21] tidyr_1.3.1                 tibble_3.3.0               
## [23] ggplot2_4.0.0               tidyverse_2.0.0            
## 
## loaded via a namespace (and not attached):
##  [1] gtable_0.3.6            xfun_0.53               bslib_0.9.0            
##  [4] msmbstyle_0.0.22        lattice_0.22-6          tzdb_0.5.0             
##  [7] vctrs_0.6.5             tools_4.5.0             parallel_4.5.0         
## [10] pkgconfig_2.0.3         Matrix_1.7-3            RColorBrewer_1.1-3     
## [13] S7_0.2.0                GenomeInfoDbData_1.2.14 lifecycle_1.0.4        
## [16] compiler_4.5.0          farver_2.1.2            htmltools_0.5.8.1      
## [19] sass_0.4.10             yaml_2.3.10             pillar_1.11.1          
## [22] crayon_1.5.3            jquerylib_0.1.4         DelayedArray_0.34.1    
## [25] cachem_1.1.0            abind_1.4-8             tidyselect_1.2.1       
## [28] digest_0.6.37           stringi_1.8.7           bookdown_0.34.2        
## [31] labeling_0.4.3          fastmap_1.2.0           grid_4.5.0             
## [34] SparseArray_1.8.1       cli_3.6.5               magrittr_2.0.4         
## [37] S4Arrays_1.8.1          utf8_1.2.6              withr_3.0.2            
## [40] UCSC.utils_1.4.0        scales_1.4.0            bit64_4.6.0-1          
## [43] timechange_0.3.0        XVector_0.48.0          httr_1.4.7             
## [46] rmarkdown_2.30          bit_4.6.0               png_0.1-8              
## [49] hms_1.1.4               evaluate_1.0.5          knitr_1.50             
## [52] rlang_1.1.6             glue_1.8.0              xml2_1.4.1             
## [55] rstudioapi_0.17.1       vroom_1.6.6             jsonlite_2.0.0         
## [58] R6_2.6.1

pkgs <- c("base", "Biobase", "BiocGenerics", "datasets", "dplyr",
          "forcats", "generics", "GenomeInfoDb", "GenomicRanges", "ggplot2",
          "graphics", "grDevices", "gridExtra", "hexbin", "IRanges", "lubridate",
          "MatrixGenerics", "matrixStats", "methods", "patchwork", "purrr",
          "readr", "rWSBIM1207", "S4Vectors", "stats", "stats4", "stringr",
          "SummarizedExperiment", "tibble", "tidyr", "tidyverse", "utils")

if (!require("BiocManager"))
   install.packages("BiocManager")
BiocManager::install(pkgs)